After lots of fighting with the intake manifold I decided to stop being cheap and throw money at the problem. What was the problem you say ?
Pardon the dirty alternator..
So the Skunk 2 intake manifold was never designed to be flipped for a RWD configuration. It has the modular design but the flipping is better suited to a K24 than a K20 because of the shorter deck height by 1″.
The intake manifold was a disaster from day 1! It requires that you cut the water pump housing to make it fit and then use spacers/washers to tension the alternator. After hacking up the housing I found that I was still likely to hit the alternator. The solution? I tried to buy the spacer that makes a B series throttle body work on the K series intake. I never attempted to install it and landed up selling it and the intake and ordering the Kmiata intake manifold and throttle body. It was backordered but worth the wait. I did follow the recommended guidance and bought the misalignment spacers due to the flanges not being parallel.
The manifold had the water passage built in which was a nice change and something I didn’t need to buy another part. Generally the fitment is good, the IAC did need a new part (from ebay) but that fitted nicely. All in all it was something I should have done from the beginning.